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Biophysics

 -  Vol. 50, No. 5, September-October 2005, pp. 710-715 Help

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Spectroscopic Investigations of the Structure of DNA Complexes with Mn2+ in UV and IR Regions
A. M. Polyanichko1,2, E. V. Chikhirzhina1, V. V. Andrushchenko3, H. Wieser3, and V. I. Vorob'ev1,2
1Institute of Cytology, Russian Academy of Sciences, Tikhoreskii pr. 4, St. Petersburg, 194064 Russia
2Department of Physics, St. Petersburg State University, Ulyanovskaya ul. 1, Staryi Petergoff, St. Petersburg, 198905 Russia
3Department of Chemistry, University of Calgary, 2500 University Drive, T2N 1N4, Calgary NW, Alberta, Canada

Received May 7, 2004
Key words: UV/IR spectroscopy, circular dichroism, DNA, manganese ions.

Interactions between manganese ions and the DNA molecules were studied by means of UV and IR spectroscopy, as well as electronic and vibrational circular dichroism. It was shown that the process of manganese ion binding can be subdivided into three stages depending on the content of manganese ions. At the first stage, when the content of manganese ions is low, the interaction of the metal ions with DNA phosphates occurs, causing partial screening of their negative charge and stabilization of the double helix. This stage ends when the manganese-to-phosphate ratio reaches 1 ([Mn]/[P] < 1). At the second stage, at 1 < [Mn]/[P] < 6, synchronous binding to phosphate groups and nitrogen bases of DNA is observed. At this stage, one manganese ion can be simultaneously coordinated to the oxygen of the phosphate group and to the neighboring nitrogen base of DNA. At a higher [Mn]/[P] ratio, the destabilization of the double-helix begins and partial breakage of the hydrogen bonds in the base pairs occurs.

References

  1. S. Santagata, V. Aidinis, and E. Spanopoulou, J. Biol. Chem. 273, 16325–16331 (1998).
  2. P. E. Shockett and D. G. Schatz, Mol. Cell. Biol. 19, 4159–4166 (1999).
  3. S. D. Patil and D. G. Rhodes, Nucleic Acids Res. 28, 2439–2445 (2000).
  4. C. G. Noble and A. Maxwell, J. Mol. Biol. 318, 361–371 (2002).
  5. H. Hays and A. J. Berdis, Biochemistry 41, 4771–4778 (2002).
  6. J. M. Hadden, A.-C. Declais, S. E. V. Phillips, and M. J. Lilley, EMBO J. 21, 3505–3515 (2002).
  7. A. Yamagata, Y. Kakuta, R. Masui, and K. Fukuyama, Proc. Natl. Acad. Sci. USA 99, 5908–5912 (2002).
  8. I. Sissoeff, J. Grisvard, and E. Guile, Prog. Biophys. Molec. Biol. 31, 165–199 (1976).
  9. J. Granot, J. Feigon, and D. R. Kearns, Biopolymers 21, 181–201 (1982).
  10. J. Grunot, J. Feigon, and D. R. Kearns, Biopolymers 21, 203–218 (1982).
  11. A. M. Polyanichko, V. V. Andrushchenko, E. V. Chikhirzhina, et al., Nucleic Acids Res. 32, 989–996 (2004).
  12. A. S. Spirin, Biokhimiya 23 (5), 657–662 (1958).
  13. E. V. Chikhirzhina, E. I. Kostyleva, E. I. Ramm, and V. I. Vorob'ev, Tsitologiya 40 (10), 883–888 (1998).
  14. V. I. Ivanov, L. E. Minchenkova, A. K. Schyolkina, and A. I. Poletayev, Biopolymers 12, 89–110 (1973).
  15. A. M. Polyanichko, E. V. Chikhirzhina, A. N. Skvortsov, et al., J. Biomol. Struct. Dyn. 19, 1053–1062 (2002).
  16. E. Taillandier, J. Liquier, and J. A. Taboury, Advances in Infrared and Raman Spectroscopy, Ed. by R. J. H. Clark and R. E. Hester (Wiley Heyden, New York, 1985), Vol. 12, pp. 65–114.
  17. V. Andrushchenko, Z. Leonenko, D. Cramb, et al., Biopolymers 61, 243–260 (2002).
  18. N. A. Kas'yanenko, N. E. D'yakonova, and E. V. Frisman, Mol. Biol. (Moscow) 23 (4), 975–982 (1989).
  19. N. A. Kas'yanenko, G. Sel'man-Khusein Sosa, V. N. Uverskii, and E. V. Frisman, Mol. Biol. (Moscow) 21 (1), 140–146 (1987).
  20. H. Fritzsche and C. Zimmer, Eur. J. Biochem. 5, 42–44 (1968).
  21. G. L. Eichhorn and Y. A. Shin, J. Am. Chem. Soc. 90, 7323–7328 (1968).
  22. A. Yamada, K. Akasaka, and H. Hatano, Biopolymers 15, 1315–1331 (1976).
  23. R. Van Steenwinkel, F. Campagnari, and M. Merlini, Biopolymers 20, 915–923 (1981).
  24. B. S. Fujimoto, J. M. Miller, N. S. Ribeiro, and J. M. Schurr, Biophys. J. 67, 304–308 (1994).
  25. S. Hanlon, A. Chan, and S. Berman, Biochim. Biophys. Acta 519, 526–536 (1978).
  26. C. Zimmer, G. Luck, H. Fritzsche, and H. Triebel, Biopolymers 10, 441–463 (1971).
  27. A. P. Yurgaitis and Y. S. Lazurkin, Biopolymers 20, 967–975 (1981).
  28. D. A. Knoll, M. G. Fried, and V. A. Bloomfield, Heat-Induced DNA Aggregation in the Presence of Divalent Metal Salts, Ed. by R. H. Sarma and M. H. Sarma (Adenine Press, New York, 1988), Vol. 11, pp. 123–145.
  29. J. Duguid, V. A. Bloomfield, J. Benevides, and G. J. Thomus, Jr., Biophys. J. 69, 2623–2641 (1995).
  30. A. M. Polyanichko, E. V. Chikhirzhina, V. V. Andrushchenko, et al., Mol. Biol. (Moscow) 38 (4), 701–712 (2004).


PII: S0006350905050076

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